PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G158200.5
Common NameB456_005G158200, LOC105794382
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 589aa    MW: 63495.6 Da    PI: 9.1427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G158200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057294123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Gorai.005G158200.5 72 FICEVCNKGFQREQNLQLHRRGH 94
                        89*******************88 PP

2zf-C2H213.10.00028148170123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Gorai.005G158200.5 148 WKCEKCSKRYAVQSDWKAHSKTC 170
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.27E-77194No hitNo description
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
PfamPF121712.9E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355100113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.27E-7143168No hitNo description
SMARTSM00355130148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAAASSSTPF FGTREENQNQ MMQVQSSTAT PTSSTAPTTA PQKRKRNHPG TSYPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL RQKTTKEVKR KVYLCPEPTC  120
VHHDPSKALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHPTNL STMGSHHLFG GNHHMSLGLS HVGSQIPPLQ  240
DQNQVQPSRN LLRLGSTSGA VKFDHLISPS NPSSLQNMPS SMFFMAEAAN QGFHQDHQSH  300
HGHGLYPNKP LHGLMQLPDL QGSTNNSPTS SNFFNLGFFS NTSATSSIST SEIGGGQGPA  360
LFPSNMGDQV GSGMSSLYTT SMQHENISPH MSATALLQKA AQIGSTTSNN TTSTLLRGLG  420
SSLSGGTKSD RPVFSPNFGS NFEGGNGSET LRSHMEDDSN LQGLMNSLAA NGNSSIFDGG  480
PSHGQDNNFG GFNGSGLTLE PQSSNANFCN VNEAKLHQNL AAGIGGTDKL TLDFLGVGGM  540
VGNISGGFSQ REQHGINISS LEPDMKSSVQ PNTEHFGHAK LVKAPRQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.23709e-38flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488199439e-38
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084941e-122AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478991.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X2
TrEMBLA0A0D2PTS50.0A0A0D2PTS5_G
STRINGVIT_01s0010g02090.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-119indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]